{"id":13900,"date":"2024-02-23T01:22:25","date_gmt":"2024-02-23T01:22:25","guid":{"rendered":"\/?p=13900"},"modified":"2024-02-23T01:23:00","modified_gmt":"2024-02-23T01:23:00","slug":"plant-full-genomes-plant-dna-geneaology","status":"publish","type":"post","link":"\/?p=13900","title":{"rendered":"Plant full genomes, Plant DNA geneaology"},"content":{"rendered":"
\n

My daughter and I were talking about plant DNA.\u00a0 A couple of years ago I bought her a full genome test for $300 just to see what her full genome looked like.<\/p>\n

I could not make sense of the plant genome testing industry and services. If you have a couple of minutes can you point us to some useful places? It seems like the wild west (for plant genome sequencing)<\/p>\n

We joked about our favorite rose bush. Maybe it is hard to get “juice” from a woody plant. I have helped a lot of people find birth parents using Ancestry DNA, and they just spit in a tube, send it in, and go online to see who is connected.\u00a0 I know there are some plant genomes on NIH.<\/p>\n

( “plant” “genomes” site:nih.gov ) has 345,000 entry points<\/p>\n

Strategies for reducing per\u2010sample costs in target capture sequencing for phylogenomics and population genomics in plants<\/strong> by Haley Hale, Elliot M. Gardner, Juan Viruel, Lisa Pokorny, and Matthew G. Johnson at https:\/\/www.ncbi.nlm.nih.gov\/pmc\/articles\/PMC7186906\/<\/p>\n

( Emily, the last one seems to have prices from 2020.)<\/p>\n

Representation and participation across 20 years of plant genome sequencing <\/strong>by Rose A. Marks, Scott Hotaling, Paul B. Frandsen, Robert VanBuren at https:\/\/www.nature.com\/articles\/s41477-021-01031-8<\/p>\n<\/div>\n

( “sequencing costs” “plants” ) has 50,800 entry points<\/div>\n
<\/div>\n
A critical comparison of technologies for a plant genome sequencing project <\/strong>by Pirita Paajanen and many others at https:\/\/academic.oup.com\/gigascience\/article\/8\/3\/giy163\/5281243\u00a0 they mention Illumina short read, Illumina makes many of the human DNA tests.<\/div>\n
<\/div>\n
Gary Schroth at Illumina <\/strong>wrote Inexpensive Sequencing Is Enabling the Age of Multiomics<\/strong> at https:\/\/www.genengnews.com\/insights\/trends-for-2024\/inexpensive-sequencing-is-enabling-the-age-of-multiomics\/\u00a0 He\u00a0 says “In the next few years, assuming a $200 genome, laboratories will be able to conduct transcriptomic, proteomic, and possibly even single-cell analyses for $1,000 or less.”<\/div>\n
On Illumina.com they have “AgriGenomics<\/strong>” at https:\/\/www.illumina.com\/areas-of-interest\/agrigenomics.htmlThe Development of Plant Genome Sequencing Technology and Its Conservation and Application<\/strong> in Endangered Gymnosperms by Kaiyue Hong ,Yasmina Radian, Teja Manda, Haibin Xu,Yuming Luo at https:\/\/www.mdpi.com\/2223-7747\/12\/23\/4006<\/p>\n<\/div>\n
\n

Richard Collins<\/p>\n

Jeffrey Bennetzen, Bennetzen Lab, University of Georgia,
\nhttp:\/\/bennetzenlab.genetics.uga.edu\/research.html<\/p>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

My daughter and I were talking about plant DNA.\u00a0 A couple of years ago I bought her a full genome test for $300 just to see what her full genome looked like. I could not make sense of the plant genome testing industry and services. If you have a couple of minutes can you point
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